| No | Title | Authors | Journal | Vol | Nr
| Page | Year |
|---|
| 1 | Hydrophobic and electrostatic interactions modulate protein escape at the ribosomal exit tunnel | Phuong Thuy Bui and Trinh Xuan Hoang
| Biophysical Journal, ISSN: 0006-3495 | 120 | 21 | 4798-4808 | 2021 |
| 2 | Marginally compact phase and ordered ground states in a model polymer with side spheres | Tatjana Škrbić, Trinh Xuan Hoang, Achille Giacometti, Amos Maritan, and Jayanth R. Banavar
| Physical Review E, ISSN: 2470-0045 | 104 | | L012501 | 2021 |
| 3 | Spontaneous dimensional reduction and ground state degeneracy in a simple chain model | Tatjana Škrbić, Trinh Xuan Hoang, Achille Giacometti, Amos Maritan, and Jayanth R. Banavar
| Physical Review E, ISSN: 2470-0045 | 104 | | L012101 | 2021 |
| 4 | Protein escape at the ribosomal exit tunnel: Effect of the tunnel shape | Phuong Thuy Bui and Trinh Xuan Hoang
| Journal of Chemical Physics, ISSN: 0021-9606 | 153 | | 045105 | 2020 |
| 5 | Local symmetry determines the phases of linear chains: a simple model for the self-assembly of peptides | Tatjana Skrbic, Trinh Xuan Hoang, Amos Maritan, Jayanth R. Banavar and Achille Giacometti
| Soft Matter, ISSN: 1744-683X | 15 | | 5596-5613 | 2019 |
| 6 | The pH-dependent electrostatic interaction of a metal nanoparticle with the MS2 virus-like particles | Anh D. Phan, Trinh X. Hoang
| Chemical Physics Letters, ISSN: 0009-2614 | 730 | | 84-88 | 2019 |
| 7 | The elixir phase of chain molecules | Tatjana Škrbić, Trinh X. Hoang, Amos Maritan, Jayanth R. Banavar, Achille Giacometti
| Proteins: Structure, Function and Bioinformatics, ISSN: 1097-0134 | 87 | 3 | 176-184 | 2019 |
| 8 | Protein escape at the ribosomal exit tunnel: Effects of native interactions, tunnel length, and macromolecular crowding | Phuong Thuy Bui, and Trinh Xuan Hoang
| Journal of Chemical Physics, ISSN: 0021-9606 | 149 | | 045102 | 2018 |
| 9 | Sequence dependent aggregation of peptides and fibril formation | Nguyen Ba Hung, Duy-Manh Le, and Trinh X. Hoang
| Journal of Chemical Physics, ISSN: 0021-9606 | 147 | | 105102 | 2017 |
| 10 | Effective stiffness and formation of secondary structures in a protein-like model | Tatjana Škrbić, Trinh X. Hoang, and Achille Giacometti
| Journal of Chemical Physics, ISSN: 0021-9606 | 145 | | 084904 | 2016 |
| 11 | Transport properties through graphene grain boundaries: strain effects versus lattice symmetry | V. Hung Nguyen, Trinh X. Hoang, P. Dollfus and J.-C. Charlier
| Nanoscale, ISSN: 2040-3364 | 8 | | 11658 | 2016 |
| 12 | From polymers to proteins: the effect of side chains and broken symmetry on the formation of secondary structures within a Wang–Landau approach | Tatjana Skrbic, Artem Badasyan, Trinh Xuan Hoang, Rudolf Podgornik and Achille Giacometti
| Soft Matter, ISSN: 1744-683X | 12 | | 4783 | 2016 |
| 13 | Folding and escape of nascent proteins at ribosomal exit tunnel | Phuong Thuy Bui and Trinh Xuan Hoang
| Journal of Chemical Physics, ISSN: 0021-9606 | 144 | | 095102 | 2016 |
| 14 | Phase diagram of the ground states of DNA condensates | Trinh X. Hoang, Hoa Lan Trinh, Achille Giacometti, Rudolf Podgornik, Jayanth R. Banavar, and Amos Maritan
| Physical Review E (Rapid Communications), ISSN: 1539-3755 | 92 | | 060701(R) | 2015 |
| 15 | From toroidal to rod-like condensates of semiflexible polymers | Trinh Xuan Hoang, Achille Giacometti, Rudolf Podgornik, Nhung T. T. Nguyen, Jayanth R. Banavar, and Amos Maritan
| JOURNAL OF CHEMICAL PHYSICS, ISSN: 0021-9606 | 140 | | 064902 | 2014 |
| 16 | Repulsive interactions of a lipid membrane with graphene in composite materials | Anh D. Phan, Trinh X. Hoang, The-Long Phan, and Lilia M. Woods
| Journal of Chemical Physics | 139 | | 184703 | 2013 |
| 17 | Surface plasmon resonances of protein-conjugated gold nanoparticles on graphitic substrates | Anh D. Phan, Trinh X. Hoang, Thi H. L. Nghiem, and Lilia M. Woods
| Applied Physics Letters | 103 | | 163702 | 2013 |
| 18 | Sequence repeats and protein structure | Trinh X. Hoang, Antonio Trovato, Flavio Seno, Jayanth R. Banavar, and Amos Maritan
| Phys. Rev. E (Rapid Communications) | 86 | | 050901(R) | 2012 |
| 19 | Shapes of hydrophobic thick membranes | Trinh X. Hoang, Jayanth R. Banavar and Amos Maritan
| EPL, ISSN: 0295-5075 | 98 | 5 | 56006 | 2012 |
| 20 | Protein Sequence and Structure: Is One More Fundamental than the Other? | Jayanth R. Banavar, T. X. Hoang, F. Seno, A. Trovato, A. Maritan
| Journal of Statistical Physics | 148 | | 636 | 2012 |
| 21 | First-principles design of nanomachines | J. R. Banavar, M. Cieplak, T. X. Hoang, A. Maritan
| Proc. Natl. Acad. Sci. USA | 106 | | 6900-6903 | 2009 |
| 22 | Inference of the solvation energy parameters of amino acids using maximum entropy approach | T. X. Hoang, F. Seno, A. Trovato, J. R. Banavar, A. Maritan
| Journal of Chemical Physics | 129 | | 035102 | 2008 |
| 23 | Symmetry, shape and order | A.Trovato, T. X. Hoang, J. R. Banavar, and A. Maritan
| Proc. Natl. Acad. Sci. USA, ISSN: 0027-8424 | 104 | | 19187 | 2007 |
| 24 | Structural motifs of biomolecules | J. R. Banavar, T. X. Hoang, J. H. Maddocks, A. Maritan, C. Poletto, A. Stasiak, and A. Trovato
| Proc. Natl. Acad. Sci. USA, ISSN: 0027-8424 | 104 | | 17283 | 2007 |
| 25 | Marginal compactness of protein native structures | T. X. Hoang, A. Trovato, F. Seno, J. R. Banavar and A. Maritan
| J. Phys.: Condens. Matter, ISSN: 0953-8984 | 18 | | S297 - S306 | 2006 |
| 26 | Common attributes of native-state structures of proteins, disordered proteins, and amyloid | T. X. Hoang, L. Marsella, A. Trovato, F. Seno, J. R. Banavar, A. Maritan
| Proc. Natl. Acad. Sci. USA, ISSN: 0027-8424 | 130 | | 6883-6888 | 2006 |
| 27 | Geometry of proteins: Hydrogen bonding, sterics, and marginally compact tubes | J. R. Banavar, M. Cieplak, A. Flammini, T. X. Hoang, R. D. Kamien, T. Lezon, D. Marenduzzo, A. Maritan, F. Seno, Y. Snir and A. Trovato
| Phys. Rev. E, ISSN: 2470-0045 | 73 | | 031921 | 2006 |
| 28 | Form of growing strings | D. Marenduzzo, T. X. Hoang, F. Seno, M. Vendruscolo and A. Maritan
| Phys. Rev. Lett., ISSN: 0031-9007 | 95 | | 098103 | 2005 |
| 29 | Mechanical properties of the domains of titin in a Go-like model | M. Cieplak, A. Pastore and T. X. Hoang
| J. Chem. Phys., ISSN: 0021-9606 | 112 | | 05906 | 2005 |
| 30 | A new interpolation formula for semiflexible polymers | A. Rosa, T. X. Hoang, D. Marenduzzo and A. Maritan
| Biophys. Chem., ISSN: 0301-4622 | 115 | | 251-254 | 2005 |
| 31 | Geometrical model for the native-state folds of proteins | T. X. Hoang, A. Trovato, F. Seno, J. R. Banavar and A. Maritan
| Biophys. Chem., ISSN: 0301-4622 | 115 | | 289-294 | 2005 |
| 32 | What determines the structures of native folds of proteins? | A. Trovato, T. X. Hoang, J. R. Banavar, A. Maritan and F. Seno
| J. Phys.: Cond. Matt., ISSN: 0953-8984 | 17 | | S1515-S1522 | 2005 |
| 33 | Protein and polymers | J. R. Banavar, T. X. Hoang and A. Maritan
| J. Chem. Phys., ISSN: 0021-9606 | 112 | | 234910 | 2005 |
| 34 | Stretching of proteins in the entropic limit | M. Cieplak, T. X. Hoang, and M. O. Robbins
| Phys. Rev. E, ISSN: 2470-0045 | 69 | | 011912 | 2004 |
| 35 | Thermal Effects in Stretching of Go-like Models of Titin and Secondary Structures | M. Cieplak, T. X. Hoang, and M. O. Robbins
| Proteins, ISSN: 1097-0134 | 56 | | 285-297 | 2004 |
| 36 | Stretching of homopolymers and contact order | M. Cieplak, T. X. Hoang, and M. O. Robbins
| Phys. Rev. E, ISSN: 2470-0045 | 70 | | 011917 | 2004 |
| 37 | Unified perspective on proteins: A physics approach | J.R. Banavar, T.X. Hoang, A. Maritan, F. Seno, and A. Trovato
| Phys. Rev. E, ISSN: 2470-0045 | 70 | | 041905 | 2004 |
| 38 | Geometry and symmetry pre-sculpt the free energy landscape of proteins | T. X. Hoang, A. Trovato, F. Seno, J. R. Banavar, and A. Maritan
| Proc. Natl. Acad. Sci. USA. | 101 | | 7960 | 2004 |
| 39 | Elasticity of semiflexible polymers with and without interactions | A. Rosa, T. X. Hoang, D. Marenduzzo and A. Maritan
| Macromolecules, ISSN: 0024-9297 | 36 | | 10095-10102 | 2003 |
| 40 | Folding of proteins in Go models with angular interactions | M. Cieplak, T.X. Hoang
| Physica A | 330 | | 195 | 2003 |
| 41 | Assembly of protein tertiary structures from secondary structures using optimized potentials | T. X. Hoang, F. Seno, J.R. Banavar, M. Cieplak, A. Maritan
| Proteins: Struct. Func. Gen. | 52 | | 155 | 2003 |
| 42 | Universality classes in protein folding times | M. Cieplak and T. X. Hoang
| Biophysical Journal | 84 | | 475 | 2003 |
| 43 | Folding and stretching in a Go-like model of titin | M. Cieplak, T. X. Hoang, M. O. Robbins
| Proteins: Struct. Func. Gen. | 49 | | 114-124 | 2002 |
| 44 | Thermal folding and mechanical unfolding pathways of protein secondary structures | M. Cieplak, T. X. Hoang, M. O. Robbins
| Proteins: Struct. Func. Gen. | 49 | | 104-113 | 2002 |
| 45 | Prediction of protein secondary structures from conformational biases | T. X. Hoang, M. Cieplak, J. R. Banavar, A. Maritan
| Proteins: Struct. Func. Gen. | 48 | | 558-565 | 2002 |
| 46 | The range of contact interactions and the kinetics of the Go models of proteins | M. Cieplak and T. X. Hoang
| International Journal of Modern Physics C | 13 | | 1231-1242 | 2002 |
| 47 | Folding pathways of prion and doppel | G. Settanni, T. X. Hoang, C. Micheletti, A. Maritan
| Biophysical Journal | 83 | | 3533-3541 | 2002 |
| 48 | Kinetic nonoptimality and vibrational stability of proteins | M. Cieplak, T. X. Hoang
| Proteins: Struct. Func. Gen. | 44 | | 20-25 | 2001 |
| 49 | Spin analogues of proteins: scaling of ‘folding’ properties | T. X. Hoang, N. Sushko, M. S. Li, M. Cieplak
| J. Phys. A: Math. Gen. | 33 | | 3977-3987 | 2000 |
| 50 | Sequencing of folding events in Go-type proteins | T. X. Hoang, M. Cieplak
| Journal of Chemical Physics | 113 | | 8319-8328 | 2000 |
| 51 | Molecular dynamics of folding of secondary structures in Go-type models of proteins | T. X. Hoang, M. Cieplak
| Journal of Chemical Physics | 112 | | 6851-6862 | 2000 |
| 52 | Energy landscapes, supergraphs, and ‘‘folding funnels’’ in spin systems | P. Garstecki, T. X. Hoang, M. Cieplak
| Physical Review E | 60 | | 3219-3226 | 1999 |
| 53 | Scaling of folding properties in simple models of proteins | M. Cieplak, T. X. Hoang, M. S. Li
| Physical Review Letters | 83 | | 1684-1687 | 1999 |
| 54 | Coarse grained description of protein folding | M. Cieplak, T. X. Hoang
| Phys. Rev. E | 58 | | 3589-3596 | 1998 |
| 55 | Protein folding and models of dynamics on the lattice | T. X. Hoang, M. Cieplak
| J. Chem. Phys. | 109 | | 9192-9196 | 1998 |
| No | Title | Authors | Journal | Vol | Nr
| Page | Year |
|---|
| 1 | Effects of macromolecular crowding on folding of small globular proteins | Nhung T. T. Nguyen, Phuong Thuy Bui, Trinh Xuan Hoang
| Communications in Physics, ISSN: 0868-3166 | 32 | | | 2022 |
| 2 | Aggregation of zoospores on sharklet microtopographic surfaces | Nhung T. T. Nguyen and Trinh Xuan Hoang
| Communications in Physics, ISSN: 0868-3166 | 31 | 3 | 279-287 | 2021 |
| 3 | Protein escape at an atomistic model of the ribosomal exit tunnel | Phuong Thuy Bui and Trinh Xuan Hoang
| Journal of Physics: Conference Series, ISSN: 1742-6596 | 1506 | | 012022 | 2020 |
| 4 | SAMPLING THE FOLDING TRANSITION STATE ENSEMBLE IN A TUBE-LIKE MODEL OF PROTEIN | Nguyen Ba Hung, Trinh Xuan Hoang
| Communications in Physics, ISSN: 0868-3166 | 29 | 2 | 129-139 | 2019 |
| 5 | ADDITIVE EFFECTS OF MACROMOLECULAR CROWDING AND CONFINEMENT ON PROTEIN STABILITY | Phuong Thuy Bui and Trinh Xuan Hoang
| Communications in Physics, ISSN: 0868-3166 | 28 | 4 | 351-360 | 2018 |
| 6 | In silico studies for the interaction of tumor necrosis factor-alpha (TNF-α) with different saponins from Vietnamese ginseng (Panax vietnamesis) | Oanh T. P. Kim, Manh D. Le, Hoang X. Trinh and Hai V. Nong
| Biophysics and Physicobiology, ISSN: 2189-4779 | 13 | | 173-180 | 2016 |
| 7 | Cascaded plasmon resonant field enhancement in protein-conjugated gold nanoparticles: Role of protein shell | Anh D. Phan, Trinh X. Hoang
| Journal of Science: Advanced Materials and Devices, ISSN: 2468-2179 | 1 | | 61-64 | 2016 |
| 8 | Aggregation of peptides in the tube model with correlated sidechain orientations | Nguyen Ba Hung and Trinh Xuan Hoang
| Journal of Physics: Conference Series, ISSN: 1742-6596 | 627 | | 012028 | 2015 |
| 9 | Effects of macromolecular crowding on protein folding | Bui Phuong Thuy, Hoang Thi Thu Huong and Trinh X Hoang
| Journal of Physics: Conference Series, ISSN: 1742-6596 | 627 | | 012027 | 2015 |
| 10 | Folding of proteins in presculpted free energy landscape | Nguyen Ba Hung, Trinh Xuan Hoang
| Communications in Physics, ISSN: 0868-3166 | 23 | 4 | 313-320 | 2013 |
| 11 | Effects of ribosomal exit tunnel on protein | Bui Phuong Thuy and Trinh Xuan Hoang
| Communications in Physics | 23 | 3 | 219-225 | 2013 |
| 12 | Evolution of protein-protein interaction networks in duplication-divergence model | Bui Phuong Thuy and Trinh Xuan Hoang
| Communications in Physics, ISSN: 0868-3166 | 22 | | 7-14 | 2012 |
